Genome-wide association
Significance along twenty-two chromosomes: the points alternate between two colors by chromosome, the chromosome numbers stand at the middle of their stretch, the dashed line marks the genome-wide threshold, and the axes end exactly at the genome and at 10. The table lists only the labeled points, so it stays short. Illustrative data, with a phone variant.
Genome-wide association
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"group": "Even chromosomes"
},
{
"x": 2618,
"y": 0.46,
"group": "Even chromosomes"
},
{
"x": 2598.5,
"y": 0.15,
"group": "Even chromosomes"
},
{
"x": 2640.8,
"y": 0.01,
"group": "Even chromosomes"
},
{
"x": 2602.7,
"y": 0.13,
"group": "Even chromosomes"
},
{
"x": 2696,
"y": 0.04,
"group": "Odd chromosomes"
},
{
"x": 2704.4,
"y": 0.21,
"group": "Odd chromosomes"
},
{
"x": 2681.7,
"y": 0.53,
"group": "Odd chromosomes"
},
{
"x": 2699.9,
"y": 0.28,
"group": "Odd chromosomes"
},
{
"x": 2695.6,
"y": 0.93,
"group": "Odd chromosomes"
},
{
"x": 2662.5,
"y": 0.66,
"group": "Odd chromosomes"
},
{
"x": 2690.6,
"y": 0.17,
"group": "Odd chromosomes"
},
{
"x": 2694.7,
"y": 0.22,
"group": "Odd chromosomes"
},
{
"x": 2712.1,
"y": 0.34,
"group": "Odd chromosomes"
},
{
"x": 2700.1,
"y": 0.03,
"group": "Odd chromosomes"
},
{
"x": 2657.2,
"y": 0.12,
"group": "Odd chromosomes"
},
{
"x": 2710.8,
"y": 0.29,
"group": "Odd chromosomes"
},
{
"x": 2692.8,
"y": 0.43,
"group": "Odd chromosomes"
},
{
"x": 2694.6,
"y": 1.1,
"group": "Odd chromosomes"
},
{
"x": 2661.6,
"y": 0.39,
"group": "Odd chromosomes"
},
{
"x": 2664.8,
"y": 0.16,
"group": "Odd chromosomes"
},
{
"x": 2679.7,
"y": 0.38,
"group": "Odd chromosomes"
},
{
"x": 2708.5,
"y": 0.16,
"group": "Odd chromosomes"
},
{
"x": 2679.7,
"y": 0.29,
"group": "Odd chromosomes"
},
{
"x": 2677.1,
"y": 0.17,
"group": "Odd chromosomes"
},
{
"x": 2660.3,
"y": 0.32,
"group": "Odd chromosomes"
},
{
"x": 2702.8,
"y": 0.28,
"group": "Odd chromosomes"
},
{
"x": 2665,
"y": 0.39,
"group": "Odd chromosomes"
},
{
"x": 2678.3,
"y": 0.23,
"group": "Odd chromosomes"
},
{
"x": 2705.9,
"y": 0.22,
"group": "Odd chromosomes"
},
{
"x": 2689.8,
"y": 0.16,
"group": "Odd chromosomes"
},
{
"x": 2657.6,
"y": 0.31,
"group": "Odd chromosomes"
},
{
"x": 2659.9,
"y": 0.12,
"group": "Odd chromosomes"
},
{
"x": 2678.6,
"y": 1.4,
"group": "Odd chromosomes"
},
{
"x": 2700.5,
"y": 0.09,
"group": "Odd chromosomes"
},
{
"x": 2685,
"y": 0.38,
"group": "Odd chromosomes"
},
{
"x": 2657.3,
"y": 0.49,
"group": "Odd chromosomes"
},
{
"x": 2670.3,
"y": 1.04,
"group": "Odd chromosomes"
},
{
"x": 2695.3,
"y": 0.03,
"group": "Odd chromosomes"
},
{
"x": 2677.9,
"y": 0.28,
"group": "Odd chromosomes"
},
{
"x": 2692.5,
"y": 0.36,
"group": "Odd chromosomes"
},
{
"x": 2658.2,
"y": 1.93,
"group": "Odd chromosomes"
},
{
"x": 2697.3,
"y": 0.24,
"group": "Odd chromosomes"
},
{
"x": 2697.8,
"y": 0.01,
"group": "Odd chromosomes"
},
{
"x": 2666.9,
"y": 0.48,
"group": "Odd chromosomes"
},
{
"x": 2744.9,
"y": 0.11,
"group": "Even chromosomes"
},
{
"x": 2737,
"y": 0.07,
"group": "Even chromosomes"
},
{
"x": 2717.1,
"y": 0.03,
"group": "Even chromosomes"
},
{
"x": 2758,
"y": 0.88,
"group": "Even chromosomes"
},
{
"x": 2758.4,
"y": 0,
"group": "Even chromosomes"
},
{
"x": 2775.4,
"y": 1.07,
"group": "Even chromosomes"
},
{
"x": 2765.6,
"y": 0.27,
"group": "Even chromosomes"
},
{
"x": 2717.5,
"y": 0.29,
"group": "Even chromosomes"
},
{
"x": 2756.7,
"y": 0.01,
"group": "Even chromosomes"
},
{
"x": 2720.3,
"y": 0.03,
"group": "Even chromosomes"
},
{
"x": 2721.6,
"y": 0.21,
"group": "Even chromosomes"
},
{
"x": 2743.4,
"y": 0.26,
"group": "Even chromosomes"
},
{
"x": 2774.4,
"y": 0.33,
"group": "Even chromosomes"
},
{
"x": 2744.9,
"y": 0.26,
"group": "Even chromosomes"
},
{
"x": 2770.2,
"y": 0.22,
"group": "Even chromosomes"
},
{
"x": 2744.5,
"y": 8.26,
"group": "Even chromosomes"
},
{
"x": 2748.6,
"y": 0.09,
"group": "Even chromosomes"
},
{
"x": 2732.2,
"y": 0.54,
"group": "Even chromosomes"
},
{
"x": 2764.1,
"y": 0.02,
"group": "Even chromosomes"
},
{
"x": 2759.6,
"y": 0.25,
"group": "Even chromosomes"
},
{
"x": 2752.8,
"y": 1.62,
"group": "Even chromosomes"
},
{
"x": 2744.5,
"y": 0.33,
"group": "Even chromosomes"
},
{
"x": 2729.3,
"y": 0.01,
"group": "Even chromosomes"
},
{
"x": 2739.8,
"y": 0.85,
"group": "Even chromosomes"
},
{
"x": 2721.5,
"y": 0.36,
"group": "Even chromosomes"
},
{
"x": 2766.4,
"y": 0.3,
"group": "Even chromosomes"
},
{
"x": 2753.6,
"y": 0.15,
"group": "Even chromosomes"
},
{
"x": 2728.4,
"y": 0.81,
"group": "Even chromosomes"
},
{
"x": 2718.9,
"y": 0.11,
"group": "Even chromosomes"
},
{
"x": 2727,
"y": 0.47,
"group": "Even chromosomes"
},
{
"x": 2729.9,
"y": 0.08,
"group": "Even chromosomes"
},
{
"x": 2723.5,
"y": 0.04,
"group": "Even chromosomes"
},
{
"x": 2716.8,
"y": 1.57,
"group": "Even chromosomes"
},
{
"x": 2735.9,
"y": 0.34,
"group": "Even chromosomes"
},
{
"x": 2728.9,
"y": 0.42,
"group": "Even chromosomes"
},
{
"x": 2721.2,
"y": 0.34,
"group": "Even chromosomes"
},
{
"x": 2762.6,
"y": 0.61,
"group": "Even chromosomes"
},
{
"x": 2740.2,
"y": 0.01,
"group": "Even chromosomes"
},
{
"x": 2750.8,
"y": 0.48,
"group": "Even chromosomes"
},
{
"x": 2743.4,
"y": 0.3,
"group": "Even chromosomes"
},
{
"x": 2792.7,
"y": 1.55,
"group": "Odd chromosomes"
},
{
"x": 2783.2,
"y": 0.46,
"group": "Odd chromosomes"
},
{
"x": 2825.2,
"y": 0.44,
"group": "Odd chromosomes"
},
{
"x": 2821.9,
"y": 0.17,
"group": "Odd chromosomes"
},
{
"x": 2816.2,
"y": 0.7,
"group": "Odd chromosomes"
},
{
"x": 2779.5,
"y": 0.24,
"group": "Odd chromosomes"
},
{
"x": 2816.5,
"y": 8.36,
"group": "Odd chromosomes"
},
{
"x": 2807.4,
"y": 0.24,
"group": "Odd chromosomes"
},
{
"x": 2802.2,
"y": 1.73,
"group": "Odd chromosomes"
},
{
"x": 2795.6,
"y": 0.06,
"group": "Odd chromosomes"
},
{
"x": 2826.7,
"y": 0.49,
"group": "Odd chromosomes"
},
{
"x": 2819.9,
"y": 0.44,
"group": "Odd chromosomes"
},
{
"x": 2806.7,
"y": 0.17,
"group": "Odd chromosomes"
},
{
"x": 2782,
"y": 0.13,
"group": "Odd chromosomes"
},
{
"x": 2781.9,
"y": 0.29,
"group": "Odd chromosomes"
},
{
"x": 2795.7,
"y": 0.5,
"group": "Odd chromosomes"
},
{
"x": 2788.2,
"y": 0.44,
"group": "Odd chromosomes"
},
{
"x": 2818.4,
"y": 0.4,
"group": "Odd chromosomes"
},
{
"x": 2816.4,
"y": 0.47,
"group": "Odd chromosomes"
},
{
"x": 2786.1,
"y": 0.28,
"group": "Odd chromosomes"
},
{
"x": 2816.4,
"y": 6.67,
"group": "Odd chromosomes"
},
{
"x": 2802.9,
"y": 0.33,
"group": "Odd chromosomes"
},
{
"x": 2791.2,
"y": 0.08,
"group": "Odd chromosomes"
},
{
"x": 2789.6,
"y": 1.22,
"group": "Odd chromosomes"
},
{
"x": 2788.1,
"y": 0.04,
"group": "Odd chromosomes"
},
{
"x": 2802.1,
"y": 0.61,
"group": "Odd chromosomes"
},
{
"x": 2801.4,
"y": 0.22,
"group": "Odd chromosomes"
},
{
"x": 2821.9,
"y": 0.15,
"group": "Odd chromosomes"
},
{
"x": 2825.2,
"y": 0.15,
"group": "Odd chromosomes"
},
{
"x": 2817.7,
"y": 0.5,
"group": "Odd chromosomes"
},
{
"x": 2800.7,
"y": 0.8,
"group": "Odd chromosomes"
},
{
"x": 2800.5,
"y": 0.4,
"group": "Odd chromosomes"
},
{
"x": 2799.8,
"y": 0.32,
"group": "Odd chromosomes"
},
{
"x": 2815.9,
"y": 0.34,
"group": "Odd chromosomes"
},
{
"x": 2799.5,
"y": 0.07,
"group": "Odd chromosomes"
},
{
"x": 2793.1,
"y": 0,
"group": "Odd chromosomes"
},
{
"x": 2779.6,
"y": 1.78,
"group": "Odd chromosomes"
},
{
"x": 2793,
"y": 0.17,
"group": "Odd chromosomes"
},
{
"x": 2809.5,
"y": 0.4,
"group": "Odd chromosomes"
},
{
"x": 2820,
"y": 0.27,
"group": "Odd chromosomes"
},
{
"x": 2855.5,
"y": 0.09,
"group": "Even chromosomes"
},
{
"x": 2867.3,
"y": 0.13,
"group": "Even chromosomes"
},
{
"x": 2872.6,
"y": 0.14,
"group": "Even chromosomes"
},
{
"x": 2850.6,
"y": 0.19,
"group": "Even chromosomes"
},
{
"x": 2868.2,
"y": 0.1,
"group": "Even chromosomes"
},
{
"x": 2874.6,
"y": 0.29,
"group": "Even chromosomes"
},
{
"x": 2862.3,
"y": 0.23,
"group": "Even chromosomes"
},
{
"x": 2830.6,
"y": 0.17,
"group": "Even chromosomes"
},
{
"x": 2828.1,
"y": 0.07,
"group": "Even chromosomes"
},
{
"x": 2861.9,
"y": 0.11,
"group": "Even chromosomes"
},
{
"x": 2858.2,
"y": 0.19,
"group": "Even chromosomes"
},
{
"x": 2831.8,
"y": 0.16,
"group": "Even chromosomes"
},
{
"x": 2861.8,
"y": 0.36,
"group": "Even chromosomes"
},
{
"x": 2837,
"y": 0.03,
"group": "Even chromosomes"
},
{
"x": 2841.8,
"y": 0.29,
"group": "Even chromosomes"
},
{
"x": 2827.2,
"y": 0.7,
"group": "Even chromosomes"
},
{
"x": 2832.3,
"y": 0.76,
"group": "Even chromosomes"
},
{
"x": 2842,
"y": 0.1,
"group": "Even chromosomes"
},
{
"x": 2871.2,
"y": 0.2,
"group": "Even chromosomes"
},
{
"x": 2857.6,
"y": 0.18,
"group": "Even chromosomes"
},
{
"x": 2875.7,
"y": 0.04,
"group": "Even chromosomes"
},
{
"x": 2833.5,
"y": 0,
"group": "Even chromosomes"
},
{
"x": 2839.4,
"y": 0.01,
"group": "Even chromosomes"
},
{
"x": 2839.3,
"y": 0.17,
"group": "Even chromosomes"
},
{
"x": 2843.5,
"y": 0.6,
"group": "Even chromosomes"
},
{
"x": 2838.7,
"y": 0.36,
"group": "Even chromosomes"
},
{
"x": 2861.1,
"y": 0.62,
"group": "Even chromosomes"
},
{
"x": 2837.5,
"y": 1.11,
"group": "Even chromosomes"
},
{
"x": 2863.3,
"y": 2.49,
"group": "Even chromosomes"
},
{
"x": 2828.6,
"y": 0.2,
"group": "Even chromosomes"
},
{
"x": 2837.9,
"y": 0.05,
"group": "Even chromosomes"
},
{
"x": 2829.8,
"y": 0.17,
"group": "Even chromosomes"
},
{
"x": 2866.5,
"y": 0.32,
"group": "Even chromosomes"
},
{
"x": 2844.1,
"y": 0.08,
"group": "Even chromosomes"
},
{
"x": 2856.4,
"y": 0.04,
"group": "Even chromosomes"
},
{
"x": 2873.7,
"y": 1.46,
"group": "Even chromosomes"
},
{
"x": 2845.9,
"y": 0.32,
"group": "Even chromosomes"
},
{
"x": 2828.6,
"y": 0.26,
"group": "Even chromosomes"
},
{
"x": 2864.1,
"y": 0.55,
"group": "Even chromosomes"
},
{
"x": 2846.1,
"y": 0.38,
"group": "Even chromosomes"
},
{
"x": 1180,
"y": 8.52,
"group": "Even chromosomes"
},
{
"x": 1180.8,
"y": 7.76,
"group": "Even chromosomes"
},
{
"x": 1181.6,
"y": 7.6,
"group": "Even chromosomes"
},
{
"x": 1182.4,
"y": 8.76,
"group": "Even chromosomes"
},
{
"x": 1183.2,
"y": 8.78,
"group": "Even chromosomes"
},
{
"x": 2250,
"y": 9.05,
"group": "Odd chromosomes"
},
{
"x": 2250.8,
"y": 8.43,
"group": "Odd chromosomes"
},
{
"x": 2251.6,
"y": 7.67,
"group": "Odd chromosomes"
},
{
"x": 2252.4,
"y": 8.54,
"group": "Odd chromosomes"
},
{
"x": 2253.2,
"y": 8.09,
"group": "Odd chromosomes"
},
{
"x": 2860,
"y": 9.31,
"group": "Even chromosomes"
},
{
"x": 2860.8,
"y": 7.93,
"group": "Even chromosomes"
},
{
"x": 2861.6,
"y": 9.12,
"group": "Even chromosomes"
},
{
"x": 2862.4,
"y": 8.79,
"group": "Even chromosomes"
},
{
"x": 2863.2,
"y": 8.09,
"group": "Even chromosomes"
}
],
"lines": [
{
"axis": "y",
"value": 7.3,
"label": "p = 5e-8"
}
],
"xTicks": [
{
"at": 124.5,
"label": "1"
},
{
"at": 370.5,
"label": "2"
},
{
"at": 591,
"label": "3"
},
{
"at": 785.5,
"label": "4"
},
{
"at": 971.5,
"label": "5"
},
{
"at": 1147.5,
"label": "6"
},
{
"at": 1312.5,
"label": "7"
},
{
"at": 1465,
"label": "8"
},
{
"at": 1608.5,
"label": "9"
},
{
"at": 1747,
"label": "10"
},
{
"at": 1882.5,
"label": "11"
},
{
"at": 2017,
"label": "12"
},
{
"at": 2141.5,
"label": "13"
},
{
"at": 2252.5,
"label": "14"
},
{
"at": 2357,
"label": "15"
},
{
"at": 2453,
"label": "16"
},
{
"at": 2538.5,
"label": "17"
},
{
"at": 2618,
"label": "18"
},
{
"at": 2686.5,
"label": "19"
},
{
"at": 2747.5,
"label": "20"
},
{
"at": 2803,
"label": "21"
},
{
"at": 2852.5,
"label": "22"
}
],
"xRange": [
0,
2878
],
"yRange": [
0,
10
],
"xTitle": "Chromosome",
"yTitle": "−log10 p"
},
"mobile": {
"width": 400,
"height": 420
}
}Source: Illustrative data, positions in megabases
Show chart data
| Point | Group | Chromosome | −log10 p |
|---|---|---|---|
| 891 | Even chromosomes | 2860 | 9.31 |
| 893 | Even chromosomes | 2861.6 | 9.12 |
| 886 | Odd chromosomes | 2250 | 9.05 |
| 574 | Odd chromosomes | 2378.5 | 8.81 |
| 894 | Even chromosomes | 2862.4 | 8.79 |
| 885 | Even chromosomes | 1183.2 | 8.78 |
| 884 | Even chromosomes | 1182.4 | 8.76 |
| 889 | Odd chromosomes | 2252.4 | 8.54 |
| 881 | Even chromosomes | 1180 | 8.52 |
| 887 | Odd chromosomes | 2250.8 | 8.43 |
| 807 | Odd chromosomes | 2816.5 | 8.36 |
| 776 | Even chromosomes | 2744.5 | 8.26 |
| 890 | Odd chromosomes | 2253.2 | 8.09 |
| 895 | Even chromosomes | 2863.2 | 8.09 |
| 892 | Even chromosomes | 2860.8 | 7.93 |
| 882 | Even chromosomes | 1180.8 | 7.76 |
| 888 | Odd chromosomes | 2251.6 | 7.67 |
| 883 | Even chromosomes | 1181.6 | 7.6 |
| 382 | Even chromosomes | 1794.4 | 6.83 |
| 821 | Odd chromosomes | 2816.4 | 6.67 |